PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104966.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 298aa    MW: 33017.7 Da    PI: 5.4497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104966.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.47e-24122176259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr    C+++ gCp++k+vers+ dp+++++tY+ eHnh+
  XP_010104966.1 122 SDSWAWRKYGQKPIKGSPYPR----CSTSkGCPARKQVERSRVDPTMLVVTYSAEHNHP 176
                     69****************996....87777****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.106116178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-25117178IPR003657WRKY domain
SuperFamilySSF1182901.31E-20118178IPR003657WRKY domain
SMARTSM007741.0E-29121177IPR003657WRKY domain
PfamPF031063.9E-19123176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSDVPLVALS VDRGLIDQFL TTTTMDITRF TSNTKTNNKK PLFMSDRSDQ DYSNDNSPST  60
TENGSESPPS TTVFNDPMKI STSISSPKKS RRSVQKRVVS IPIKEVEGSR LKGEISGSTP  120
PSDSWAWRKY GQKPIKGSPY PRCSTSKGCP ARKQVERSRV DPTMLVVTYS AEHNHPWPAS  180
RNNHHNHHRS QSAAATSASA KLLKEEAPET QPEPEPDPES EERFAGLVGD EFVGWFGDME  240
TTSSRVLESP IFADADVAPL VFPMREEDES LFADLGELPE CSLVFRHYRG VGPEVEIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A5e-151231791978Probable WRKY transcription factor 4
1wj2_A5e-151231791978Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104966.10.0putative WRKY transcription factor 65
SwissprotQ9LP566e-77WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLW9S0Q80.0W9S0Q8_9R
STRINGPOPTR_0011s06990.15e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-61WRKY DNA-binding protein 65